HelianthusVariants.vcf.gz: Variants called across 493 accessions including the sunflower association mapping population, landraces and wild congener species. GenomeScans_bedFiles: Genome scans statistics in the SAM population and each subgroup (males-RHA, females-HA, Oil and non-oil) including Tajima's D, Pi, CLR, Fst and recombination rates. PanGenome.20170709.fasta: The cultivated sunflower pan-genome sequences in nucleotide fasta format. PanGenome_Prot.faa: The cultivated sunflower pan-genome genes in protein fasta format. mat_CV3.txt: Presence absence of each gene in each accession. Score correspond to the bit-score value obtained from the blast procedure. IntroFromWild_PPN_636.txt: A matrix including the 636 genes identified as post-domestication introgressions from wild congener species.